Clinical trial cost benchmarking

Clinical trial cost benchmarking

Estimating the total cost of a clinical trial before it runs is challenging. Public data on past trial costs can be hard to come by, as many companies guard this information carefully. Trials in high income countries and low and middle income countries have very different costs.

Clinical trial costs are not normally distributed.[1] I took a dataset of just over 10,000 US-funded trials. You can see that the range is huge, from small device or behavioural trials costing as little as $50,000, while large multi-centre international trials can cost hundreds of millions. This means that modelling trial costs is extremely challenging. Tools like linear regression will not work out of the box - any model will be swamped by effects from outliers.

Clinical trial funding

Above: histogram of clinical trial costs. You can see the distribution has an extreme long tail.

Fortunately, a log transform of trial costs does bring you to a more manageable distribution.

Clinical trial funding

Above: histogram of clinical trial costs after log transformation. At this point the distribution resembles a bell curve, which means that log costs should be easier to model.

Further challenges to modelling costs come from the fact that there are so many variables. For example, every condition and drug could be in effect their own input variable to a regression model.

Industry funded studies have reported average costs of bringing new drugs to the market of $802M-$2.6B.[2,3,4] A review of 726 studies in 2016 found that the median cost of a Phase 1 clinical trial was $3.4M, with $8.6M for Phase 2 and $21.4M for Phase 3.[5] These reported numbers are useful to an extent for benchmarking, but when the variance within a phase spans multiple orders of magnitude, we need to be more precise.

What use would a mean or median value be when the distribution of values in that class is so extreme (like in my histogram above)?

What is clinical trial cost benchmarking?

I would define cost benchmarking as modelling trial costs according to what different companies have spent on comparable trials. It is useful for a trial sponsor to model trial costs both in relation to past trials that they have funded, and also trials that competitors have funded. The latter concept is what I am terming “cost benchmarking”.

Reference class forecasting

The Clinical Trial Risk Tool now provides a cost benchmarking functionality. The benchmark function uses public domain data on costs of past trials, and we use AI and natural language processing to find trials with similar inclusion criteria, interventions, conditions, and design to your trial. The most similar past trials are factored to create a prediction and a range.

Costs from past trials are inflation-adjusted upwards by 3%,[1] so inputs to the model from older trials are still relevant.

Benchmarking screenshot

The tool displays the estimated cost, a lower and upper bound, and the past trials that the cost estimate was based on.

Find out about trial cost benchmarking

Talk to us about your trial budget

Get in touch if you would like to subscribe to the tool’s cost benchmarking module and drag and drop your trial protocols and generate benchmark estimates.

How do the costs vary by phase?

Below you can see a summary of the cost distributions of our clinical trial dataset by phase.

Phase 1 Clinical trial funding

Going back to the linear scale (without the log 10 transformation), you can see that the skew of the cost distribution is particularly high in Phase 1, making Phase 1 (somewhat surprisingly) one of the hardest to model. For all phases, the median is very different from the mean.

PhaseNMean costMedian costStandard deviationSkew
0Early Phase 1134$1,351,000$816,000$1,597,0004.14
1Phase 1616$2,419,000$984,000$4,035,0005.81
2Phase 1/Phase 2298$2,733,000$1,135,000$4,529,0003.33
3Phase 21045$2,205,000$1,459,000$3,035,0005.71
4Phase 2/Phase 3174$2,803,000$1,844,000$4,375,0005.41
5Phase 3524$4,328,000$2,515,000$6,204,0003.45
6Phase 4413$2,391,000$1,766,000$2,787,0004.67

Moving back to the log10 scale, Phase 1 and Phase 1/Phase 2 have the highest skews.

PhaseNMean log10 costMedian log10 costStandard deviationSkew
0Early Phase 11345.955.910.390.17
1Phase 16166.085.990.50.24
2Phase 1/Phase 22986.096.050.520.45
3Phase 210456.126.160.43-0.01
4Phase 2/Phase 31746.216.270.45-0.21
5Phase 35246.376.40.48-0.21
6Phase 44136.26.250.4-0.18

Top-down or bottom-up modelling

In addition to cost benchmarking, you can model a trial cost, by identifying all activities associated with the trial (such as the assessments in the schedule of events), and sum these items to create a budget. This is complex and time consuming, but creates an itemised budget. The Clinical Trial Risk Tool allows you to build a site budget directly from the protocol PDF.

Above: the Clinical Trial Risk Tool lets you upload a protocol and will automatically check the protocol design against its checklist, as well as generating a site budget for you.

Upload your clinical trial protocol and create a budget with AI

Protocol to budget

Upload your clinical trial protocol in PDF form to the Clinical Trial Risk Tool and create an itemised per-patient and fixed costs budget using our charge masters, or upload your own charge master.

Try looking up your own trial

Trial Cost Benchmarking Demo

For full functionality please try uploading your protocol to the Clinical Trial Risk Tool. The tool will extract the below information and many more parameters from the PDF and use this to model the trial cost for benchmarking purposes.

Projection

$0

Range:

Comparable Trials

References

  1. Theresia, Yiallourou, et al. “Cost Drivers and Predictive Modeling of Clinical Trial Costs: Analysis of 101 Global Health Trials.” VeriXiv 2.152 (2025): 152.
  2. DiMasi JA, Hansen RW, Grabowski HG: The price of innovation: New estimates of drug development costs. J. Health Econ. 2003; 22: 151–185.
  3. DiMasi JA, Grabowski HG, Hansen RW: Innovation in the pharmaceutical industry: New estimate of R&D costs. J. Health Econ. 2016; 47: 20–33
  4. Young R, Bekele T, Gunn A, et al.: Developing new health technologies for neglected diseases: A pipeline portfolio review and cost model. Gates Open Research. 2020; 2.
  5. Martin L, Hutchens M, Hawkins C, et al.: How much do clinical trials cost? Nat. Rev. Drug Discov. 2017; 16: 381–382
  6. Flyvbjerg, Bent. Curbing optimism bias and strategic misrepresentation in planning: Reference class forecasting in practice. European planning studies 16.1 (2008): 3-21.

See also

Clinical study budget templates and generators - best practices to follow

Clinical study budget templates and generators - best practices to follow

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The anatomy of an oncology clinical trial protocol

The anatomy of an oncology clinical trial protocol

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Six ways to deal with rising clinical trial costs

Six ways to deal with rising clinical trial costs

Guest post by Safeer Khan, Lecturer at Department of Pharmaceutical Sciences, Government College University, Lahore, Pakistan Introduction In recent years, the cost of conducting clinical trials has risen dramatically. This increase has posed a significant challenge for pharmaceutical companies, researchers, and healthcare innovators. According to a study published in Nature Reviews in 2017, the median cost of conducting a study was $3.4 million for phase I trials, $8.6 million for phase II trials, and $21.